Life Sciences NGS Analysis

ngs-analysis

Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper decision skills for high-risk assay branches.

Install

Start a new Codex session after installation to use the plugin

Category: Education & Research
Author: OpenAI
GitHub: openai/plugins
Website: openai.com

Good for

DNA variant analysis
RNA-seq QC
Single-cell sequencing data processing
Metagenomics analysis

Getting started

Install plugin: codex plugin add ngs-analysis@openai-curated
Import BCL or FASTQ files
Select analysis type based on prompts
Review generated reports and visualizations

Before you install

Requires local tool support, some features may need additional configuration.

Summarized by AI from the project docs; check the official docs before relying on it.

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